Variant report

Variant	rs59110702
Chromosome Location	chr9:73279846-73279847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511986	0.82[ASN][1000 genomes]
rs10868883	0.81[ASN][1000 genomes]
rs11142514	0.87[EUR][1000 genomes]
rs11142518	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11142522	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142523	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142545	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11142550	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11142552	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11142553	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11142562	0.82[ASN][1000 genomes]
rs11142564	0.82[ASN][1000 genomes]
rs11142567	0.81[ASN][1000 genomes]
rs11142570	0.81[ASN][1000 genomes]
rs11142573	0.82[ASN][1000 genomes]
rs11142574	0.82[ASN][1000 genomes]
rs11142575	0.82[ASN][1000 genomes]
rs11142577	0.82[ASN][1000 genomes]
rs11142581	0.80[ASN][1000 genomes]
rs11142582	0.80[ASN][1000 genomes]
rs11531868	0.81[ASN][1000 genomes]
rs12236832	0.81[ASN][1000 genomes]
rs12682954	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684073	0.81[ASN][1000 genomes]
rs12684412	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12685630	0.80[ASN][1000 genomes]
rs17055447	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4745036	0.82[ASN][1000 genomes]
rs4745037	0.81[ASN][1000 genomes]
rs4745039	0.81[ASN][1000 genomes]
rs56697575	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56882913	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56904143	0.82[ASN][1000 genomes]
rs60753490	0.81[ASN][1000 genomes]
rs60859076	0.81[ASN][1000 genomes]
rs72614623	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72614624	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73279800-73280000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:73279800-73280000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr9:73279800-73280000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr9:73279800-73281400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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