Variant report

Variant	rs11142545
Chromosome Location	chr9:73291780-73291781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10435960	0.81[AMR][1000 genomes]
rs10511986	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10868883	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11142514	0.82[EUR][1000 genomes]
rs11142518	0.89[EUR][1000 genomes]
rs11142522	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142523	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142550	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142552	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142553	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142562	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142564	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142567	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11142570	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11142573	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142574	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142575	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142577	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11142578	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11142581	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11142582	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11142586	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11142587	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11531868	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12236832	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12682954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684073	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12684412	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12685630	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12685885	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17055447	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4745036	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4745037	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4745039	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56697575	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs56882913	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56904143	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59110702	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60753490	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60859076	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72614623	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614624	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72614626	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7870794	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73288000-73292200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:73288200-73292000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:73290600-73292200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73290800-73292000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:73290800-73293400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:73291000-73294600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr9:73291200-73293200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links