Variant report

Variant	rs7870794
Chromosome Location	chr9:73310758-73310759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10115619	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10115622	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10116679	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10116707	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10116914	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10118419	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10123284	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10123287	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10511985	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10511986	0.92[ASN][1000 genomes]
rs10780959	0.89[AFR][1000 genomes]
rs10868883	0.91[ASN][1000 genomes]
rs11142545	0.93[ASN][1000 genomes]
rs11142550	0.93[ASN][1000 genomes]
rs11142552	0.96[ASN][1000 genomes]
rs11142553	0.96[ASN][1000 genomes]
rs11142562	0.92[ASN][1000 genomes]
rs11142564	0.92[ASN][1000 genomes]
rs11142567	0.91[ASN][1000 genomes]
rs11142570	0.91[ASN][1000 genomes]
rs11142573	0.92[ASN][1000 genomes]
rs11142574	0.92[ASN][1000 genomes]
rs11142575	0.92[ASN][1000 genomes]
rs11142577	0.92[ASN][1000 genomes]
rs11142578	0.90[ASN][1000 genomes]
rs11142581	0.90[ASN][1000 genomes]
rs11142582	0.90[ASN][1000 genomes]
rs11142586	0.88[ASN][1000 genomes]
rs11142587	0.88[ASN][1000 genomes]
rs11531868	0.94[ASN][1000 genomes]
rs11793669	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12236832	0.91[ASN][1000 genomes]
rs12682954	0.93[ASN][1000 genomes]
rs12684073	0.91[ASN][1000 genomes]
rs12684412	0.88[ASN][1000 genomes]
rs12685630	0.90[ASN][1000 genomes]
rs12685885	0.90[ASN][1000 genomes]
rs28534504	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4617221	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4745036	0.92[ASN][1000 genomes]
rs4745037	0.91[ASN][1000 genomes]
rs4745039	0.91[ASN][1000 genomes]
rs56882913	0.95[ASN][1000 genomes]
rs56904143	0.95[ASN][1000 genomes]
rs60753490	0.91[ASN][1000 genomes]
rs60859076	0.91[ASN][1000 genomes]
rs7022824	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7023527	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7023662	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs72614623	0.96[ASN][1000 genomes]
rs72614624	0.96[ASN][1000 genomes]
rs72614626	0.90[ASN][1000 genomes]
rs7847043	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7854781	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7854884	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7855876	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7856127	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7866059	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
2	nsv6556	chr9:73304158-73363098	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73305800-73311800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:73306600-73311000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:73309000-73317200	Weak transcription	Fetal Kidney	kidney
4	chr9:73309800-73316400	Weak transcription	Fetal Brain Male	brain
5	chr9:73310600-73312000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:73310600-73312800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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