Variant report

Variant	rs11142640
Chromosome Location	chr9:73509941-73509942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10118647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13440009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28541272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28572560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993011	1.00[EUR][1000 genomes]
rs3010429	0.88[EUR][1000 genomes]
rs60191817	0.81[EUR][1000 genomes]
rs61703666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv818705	chr9:73500857-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3483093	chr9:73500939-73514808	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3483094	chr9:73500939-73514808	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3693031	chr9:73502424-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv818706	chr9:73502424-73510880	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv516833	chr9:73502424-73514958	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73508600-73519800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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