Variant report

Variant	rs3010429
Chromosome Location	chr9:73577044-73577045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10113933	0.85[AMR][1000 genomes]
rs10114619	1.00[AMR][1000 genomes]
rs10118647	0.88[EUR][1000 genomes]
rs10120519	1.00[AMR][1000 genomes]
rs10122126	1.00[AMR][1000 genomes]
rs10125698	1.00[AMR][1000 genomes]
rs11142640	0.88[EUR][1000 genomes]
rs12341381	1.00[AMR][1000 genomes]
rs12341540	1.00[AMR][1000 genomes]
rs12341827	1.00[AMR][1000 genomes]
rs12346408	0.88[EUR][1000 genomes]
rs12352390	0.85[AMR][1000 genomes]
rs13297816	0.88[EUR][1000 genomes]
rs13440009	0.88[EUR][1000 genomes]
rs28541272	0.88[EUR][1000 genomes]
rs28572560	0.88[EUR][1000 genomes]
rs28647584	1.00[AMR][1000 genomes]
rs2993011	0.88[EUR][1000 genomes]
rs60191817	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61703666	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73571000-73579800	Weak transcription	Osteobl	bone
2	chr9:73574600-73579600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:73574800-73578000	Weak transcription	HSMMtube	muscle
4	chr9:73574800-73578800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:73575200-73580000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:73577000-73577800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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