Variant report

Variant	rs12341827
Chromosome Location	chr9:73668693-73668694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10113933	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10114619	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10120519	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121545	0.83[EUR][1000 genomes]
rs10122126	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10123815	1.00[EUR][1000 genomes]
rs10125698	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12341381	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12352390	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28640110	0.96[EUR][1000 genomes]
rs28647584	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28705359	0.83[EUR][1000 genomes]
rs3010429	1.00[AMR][1000 genomes]
rs57681686	0.96[EUR][1000 genomes]
rs60191817	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7036586	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042806	chr9:73613885-73686104	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73643800-73684000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:73663600-73669200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:73667000-73670400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:73667600-73672400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:73667600-73680600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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