Variant report

Variant	rs28640110
Chromosome Location	chr9:73721575-73721576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10113933	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10114619	0.96[EUR][1000 genomes]
rs10120519	0.96[EUR][1000 genomes]
rs10121545	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10122126	1.00[EUR][1000 genomes]
rs10123815	0.96[EUR][1000 genomes]
rs10125698	1.00[EUR][1000 genomes]
rs12341381	0.96[EUR][1000 genomes]
rs12341540	0.96[EUR][1000 genomes]
rs12341827	0.96[EUR][1000 genomes]
rs12352390	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28647584	0.96[EUR][1000 genomes]
rs57681686	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60191817	0.81[EUR][1000 genomes]
rs7036586	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73717800-73726600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:73719000-73725000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73720400-73735200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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