Variant report

Variant	rs28647584
Chromosome Location	chr9:73651468-73651469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10113933	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10114619	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10120519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10121545	0.83[EUR][1000 genomes]
rs10122126	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10123815	1.00[EUR][1000 genomes]
rs10125698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12341381	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341540	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341827	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12352390	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28640110	0.96[EUR][1000 genomes]
rs28705359	0.83[EUR][1000 genomes]
rs3010429	1.00[AMR][1000 genomes]
rs57681686	0.96[EUR][1000 genomes]
rs60191817	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7036586	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042806	chr9:73613885-73686104	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73641600-73652600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:73643800-73684000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:73651000-73651600	Enhancers	Brain Hippocampus Middle	brain
4	chr9:73651000-73651800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
5	chr9:73651000-73651800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:73651000-73652600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:73651200-73651600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:73651200-73651600	Enhancers	Fetal Kidney	kidney
9	chr9:73651200-73651600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr9:73651200-73651600	Enhancers	HUVEC	blood vessel
11	chr9:73651200-73651800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:73651200-73651800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:73651200-73651800	Enhancers	Liver	Liver
14	chr9:73651200-73651800	Enhancers	Brain Angular Gyrus	brain
15	chr9:73651200-73651800	Enhancers	Brain Germinal Matrix	brain
16	chr9:73651200-73651800	Enhancers	Fetal Lung	lung
17	chr9:73651400-73651600	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links