Variant report

Variant	rs11142649
Chromosome Location	chr9:71108432-71108433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11142867	1.00[ASN][1000 genomes]
rs62553015	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas
2	chr9:71096600-71108600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:71101800-71113600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:71102000-71109000	Weak transcription	NHLF	lung
5	chr9:71102200-71121000	Weak transcription	Fetal Kidney	kidney
6	chr9:71102400-71110800	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:71102400-71111200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:71103600-71122000	Weak transcription	Ovary	ovary
9	chr9:71103800-71114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:71104400-71114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:71105200-71109200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:71106400-71109600	Enhancers	Rectal Smooth Muscle	rectum
13	chr9:71107000-71109400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:71107000-71110200	Genic enhancers	Stomach Smooth Muscle	stomach
15	chr9:71107200-71108800	Enhancers	Fetal Brain Female	brain
16	chr9:71107200-71109400	Enhancers	Fetal Lung	lung
17	chr9:71107200-71110000	Enhancers	HSMMtube	muscle
18	chr9:71107400-71110000	Enhancers	Fetal Heart	heart
19	chr9:71107600-71108800	Weak transcription	Aorta	Aorta
20	chr9:71107600-71109600	Enhancers	Fetal Stomach	stomach
21	chr9:71107600-71109800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr9:71107800-71109000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:71107800-71109000	Enhancers	Colon Smooth Muscle	Colon
24	chr9:71108000-71108800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:71108000-71109600	Weak transcription	Right Atrium	heart
26	chr9:71108000-71111000	Weak transcription	Left Ventricle	heart
27	chr9:71108400-71108800	Weak transcription	Right Ventricle	heart
28	chr9:71108400-71109600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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