Variant report

Variant	rs62553015
Chromosome Location	chr9:71101487-71101488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf71-4	chr9:71101414-71101603	l_3781_chr9:71101413-71111836_heart

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11142649	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142867	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71077800-71103400	Weak transcription	Right Ventricle	heart
2	chr9:71078200-71103400	Weak transcription	HSMMtube	muscle
3	chr9:71087400-71107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas
5	chr9:71093600-71101600	Weak transcription	Fetal Intestine Large	intestine
6	chr9:71096600-71101600	Weak transcription	NHLF	lung
7	chr9:71096600-71108600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:71098800-71102400	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:71099000-71102800	Strong transcription	Left Ventricle	heart
10	chr9:71099400-71103200	Weak transcription	Aorta	Aorta
11	chr9:71099800-71102800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:71100000-71102400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
13	chr9:71100200-71102000	Strong transcription	Rectal Smooth Muscle	rectum
14	chr9:71100200-71102400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:71100400-71102400	ZNF genes & repeats	Fetal Muscle Leg	muscle
16	chr9:71100600-71101800	ZNF genes & repeats	Fetal Lung	lung
17	chr9:71100800-71101800	ZNF genes & repeats	Ovary	ovary
18	chr9:71100800-71102000	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr9:71100800-71102200	ZNF genes & repeats	Fetal Kidney	kidney
20	chr9:71100800-71102200	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:71101200-71101800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr9:71101200-71101800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
23	chr9:71101400-71102200	ZNF genes & repeats	Fetal Heart	heart
24	chr9:71101400-71107200	Weak transcription	Fetal Stomach	stomach

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