Variant report

Variant	rs11142719
Chromosome Location	chr9:73806972-73806973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10868991	1.00[ASN][1000 genomes]
rs11142711	1.00[ASN][1000 genomes]
rs11142717	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142736	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142750	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142757	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142763	1.00[ASN][1000 genomes]
rs11142773	1.00[ASN][1000 genomes]
rs11142777	1.00[ASN][1000 genomes]
rs11142778	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142779	1.00[ASN][1000 genomes]
rs11142780	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142781	1.00[ASN][1000 genomes]
rs12380581	1.00[ASN][1000 genomes]
rs1504388	1.00[ASN][1000 genomes]
rs1504389	1.00[ASN][1000 genomes]
rs1504390	1.00[ASN][1000 genomes]
rs1504391	1.00[ASN][1000 genomes]
rs1504392	1.00[ASN][1000 genomes]
rs1504404	1.00[ASN][1000 genomes]
rs1532801	1.00[ASN][1000 genomes]
rs17056425	1.00[ASN][1000 genomes]
rs17056483	1.00[ASN][1000 genomes]
rs17616798	1.00[ASN][1000 genomes]
rs2174308	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309916	1.00[ASN][1000 genomes]
rs35533028	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4079469	1.00[ASN][1000 genomes]
rs4370599	1.00[ASN][1000 genomes]
rs4370600	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021834	1.00[ASN][1000 genomes]
rs7039341	1.00[ASN][1000 genomes]
rs7043726	1.00[ASN][1000 genomes]
rs73467746	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73469317	1.00[ASN][1000 genomes]
rs73647995	1.00[ASN][1000 genomes]
rs763359	1.00[ASN][1000 genomes]
rs7848661	1.00[ASN][1000 genomes]
rs7854330	1.00[ASN][1000 genomes]
rs7870153	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9785216	1.00[ASN][1000 genomes]
rs985654	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv984559	chr9:73789685-73831841	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73798800-73809400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links