Variant report

Variant	rs35533028
Chromosome Location	chr9:73858306-73858307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10868991	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142711	1.00[ASN][1000 genomes]
rs11142717	1.00[ASN][1000 genomes]
rs11142719	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142736	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142750	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142757	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142763	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142773	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142777	1.00[ASN][1000 genomes]
rs11142778	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142779	1.00[ASN][1000 genomes]
rs11142780	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142781	1.00[ASN][1000 genomes]
rs12380581	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504388	1.00[ASN][1000 genomes]
rs1504389	1.00[ASN][1000 genomes]
rs1504390	1.00[ASN][1000 genomes]
rs1504391	1.00[ASN][1000 genomes]
rs1504392	1.00[ASN][1000 genomes]
rs1504404	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532801	1.00[ASN][1000 genomes]
rs17056425	1.00[ASN][1000 genomes]
rs17056483	1.00[ASN][1000 genomes]
rs17616798	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174308	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2309916	1.00[ASN][1000 genomes]
rs4079469	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370599	1.00[ASN][1000 genomes]
rs4370600	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021834	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039341	1.00[ASN][1000 genomes]
rs7043726	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73467746	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73469317	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647995	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs763359	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848661	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854330	1.00[ASN][1000 genomes]
rs7870153	1.00[ASN][1000 genomes]
rs9785216	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985654	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv430073	chr9:73825109-73869960	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430074	chr9:73825109-73870395	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73853400-73858800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:73854600-73860600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:73855200-73858600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:73855600-73858800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:73855600-73860400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:73856200-73858600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:73856200-73858600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:73856600-73858800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:73857000-73858600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:73857000-73859200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:73857600-73861600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:73858000-73859200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:73858000-73860400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:73858200-73861600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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