Variant report

Variant	rs11144059
Chromosome Location	chr9:71481597-71481598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:71481298..71483718-chr9:71491074..71493993,2	MCF-7	breast:
2	chr9:71477100..71479785-chr9:71480744..71483651,2	K562	blood:
3	chr9:71477461..71479791-chr9:71480861..71483693,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10448322	0.85[EUR][1000 genomes]
rs10448338	0.86[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs10781282	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10869320	0.81[CEU][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap]
rs11143622	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11143638	0.86[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs11143694	0.80[ASN][1000 genomes]
rs11143732	0.81[ASN][1000 genomes]
rs11143761	0.80[CEU][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap]
rs11143777	0.81[CEU][hapmap]
rs11143833	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11143868	1.00[JPT][hapmap]
rs11143870	1.00[YRI][hapmap]
rs11143882	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs11143893	0.93[ASN][1000 genomes]
rs11143900	0.88[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11143938	0.85[EUR][1000 genomes]
rs11143951	0.80[CEU][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11143988	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs11143991	0.80[ASN][1000 genomes]
rs11143995	0.93[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs11143997	0.94[ASN][1000 genomes]
rs11144031	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11144063	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144074	1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144102	0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11144115	0.89[ASN][1000 genomes]
rs11144136	0.80[CEU][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144138	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs11144152	0.81[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144154	0.81[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144158	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144162	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144163	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144174	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11144178	0.80[CEU][hapmap];0.82[MEX][hapmap];0.91[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144181	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144191	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144206	0.82[MEX][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs11144215	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11144274	0.82[EUR][1000 genomes]
rs11144305	0.80[CEU][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11144327	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11144351	0.86[CEU][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12003432	0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs12376037	0.81[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12376991	0.81[CEU][hapmap]
rs12377033	0.81[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12379061	0.81[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs12380573	0.82[MEX][hapmap]
rs12552102	0.86[CEU][hapmap]
rs12555728	0.81[CEU][hapmap]
rs1414951	0.81[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414952	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414954	0.80[CEU][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17058634	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17058780	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17058792	0.88[CEU][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17391456	0.80[CEU][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap]
rs17391582	0.80[CEU][hapmap]
rs17483165	0.81[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs62566871	0.87[EUR][1000 genomes]
rs62566872	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62566911	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62566915	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62566916	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62571161	0.83[EUR][1000 genomes]
rs7042283	0.87[EUR][1000 genomes]
rs7043816	0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs72720053	0.89[EUR][1000 genomes]
rs72720061	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72720068	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7865397	0.88[CEU][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7866988	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs883951	0.82[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	nsv466393	chr9:71453443-71704827	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv614547	chr9:71453443-71704827	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
15	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71438000-71491200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:71448200-71485600	Weak transcription	Stomach Mucosa	stomach
3	chr9:71459000-71519200	Weak transcription	Colonic Mucosa	Colon
4	chr9:71460400-71495600	Weak transcription	Aorta	Aorta
5	chr9:71460800-71517000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr9:71463400-71492800	Weak transcription	GM12878-XiMat	blood
7	chr9:71463600-71501800	Weak transcription	Small Intestine	intestine
8	chr9:71467800-71495800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:71468200-71486600	Weak transcription	Left Ventricle	heart
10	chr9:71470600-71483600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:71474600-71492400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:71474800-71501800	Weak transcription	Right Ventricle	heart
13	chr9:71476800-71483400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:71476800-71483600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:71477000-71482600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:71477000-71485600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:71477200-71483400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:71477200-71483600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:71477800-71483800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr9:71478000-71482400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:71478000-71486000	Strong transcription	Primary B cells from cord blood	blood
22	chr9:71478800-71482000	Strong transcription	Fetal Intestine Large	intestine
23	chr9:71479200-71483600	Weak transcription	Fetal Heart	heart
24	chr9:71479200-71501600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:71480000-71482400	Strong transcription	Fetal Intestine Small	intestine
26	chr9:71480000-71482800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr9:71480000-71483400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:71480800-71483800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:71480800-71486200	Weak transcription	Gastric	stomach
30	chr9:71480800-71495600	Weak transcription	Lung	lung
31	chr9:71480800-71495600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr9:71480800-71501200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:71481000-71485000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr9:71481200-71485600	Weak transcription	HepG2	liver
35	chr9:71481200-71504000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:71481400-71481600	Weak transcription	H9 Cell Line	embryonic stem cell

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