Variant report

Variant	rs11145011
Chromosome Location	chr9:79316081-79316082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79306577..79308697-chr9:79313991..79316581,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106772	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10781370	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10781371	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10869797	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10869798	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10869800	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10869805	0.83[ASN][1000 genomes]
rs11145010	0.80[EUR][1000 genomes]
rs11145012	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11145017	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11145018	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11145019	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11145021	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11145023	0.88[ASN][1000 genomes]
rs12238013	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683741	0.81[ASN][1000 genomes]
rs1329014	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1974326	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2077181	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2113942	0.87[AMR][1000 genomes]
rs2277155	0.95[ASN][1000 genomes]
rs3739521	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3739524	0.97[ASN][1000 genomes]
rs537903	0.80[ASN][1000 genomes]
rs57608282	0.83[ASN][1000 genomes]
rs577993	0.80[ASN][1000 genomes]
rs600859	0.80[ASN][1000 genomes]
rs626837	0.81[ASN][1000 genomes]
rs641088	0.80[ASN][1000 genomes]
rs658548	0.80[ASN][1000 genomes]
rs7042953	0.83[ASN][1000 genomes]
rs9314853	0.83[ASN][1000 genomes]
rs9785303	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893481	chr9:79304043-79348193	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79300400-79332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:79307400-79317600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:79312000-79316600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:79314200-79316800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:79314200-79320000	Enhancers	Fetal Brain Male	brain
6	chr9:79314400-79316200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:79314400-79316600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:79314400-79316800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:79314400-79316800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:79314400-79316800	Enhancers	Brain Anterior Caudate	brain
11	chr9:79314400-79316800	Enhancers	Osteobl	bone
12	chr9:79314400-79317200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:79314400-79317800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:79314400-79317800	Genic enhancers	HSMMtube	muscle
15	chr9:79314400-79318800	Enhancers	Fetal Muscle Leg	muscle
16	chr9:79314600-79316800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:79314600-79316800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:79314600-79317600	Enhancers	NHDF-Ad	bronchial
19	chr9:79314800-79316600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:79314800-79316600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:79314800-79316800	Enhancers	Brain Angular Gyrus	brain
22	chr9:79314800-79316800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:79314800-79316800	Enhancers	NH-A	brain
24	chr9:79314800-79317000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:79314800-79317200	Enhancers	Brain Hippocampus Middle	brain
26	chr9:79314800-79317600	Genic enhancers	HSMM	muscle
27	chr9:79314800-79318800	Enhancers	Fetal Stomach	stomach
28	chr9:79315000-79316200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:79315000-79316200	Weak transcription	Fetal Brain Female	brain
30	chr9:79315000-79317000	Enhancers	HUVEC	blood vessel
31	chr9:79315000-79318000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr9:79315200-79316200	Weak transcription	Psoas Muscle	Psoas
33	chr9:79315200-79319400	Weak transcription	Stomach Mucosa	stomach
34	chr9:79315200-79319600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr9:79315200-79327600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:79315400-79316600	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:79315400-79318000	Weak transcription	Fetal Lung	lung
38	chr9:79315400-79319400	Weak transcription	Fetal Kidney	kidney
39	chr9:79315600-79316200	Enhancers	Fetal Muscle Trunk	muscle
40	chr9:79315600-79316400	Enhancers	Fetal Intestine Small	intestine
41	chr9:79315800-79316400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr9:79315800-79316400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr9:79315800-79316600	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr9:79315800-79316800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr9:79315800-79316800	Enhancers	Brain Cingulate Gyrus	brain
46	chr9:79315800-79317600	Enhancers	Aorta	Aorta
47	chr9:79315800-79318000	Enhancers	Rectal Smooth Muscle	rectum
48	chr9:79315800-79318400	Weak transcription	Fetal Thymus	thymus
49	chr9:79316000-79316200	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr9:79316000-79316400	Enhancers	HUES6 Cell Line	embryonic stem cell

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