Variant report

Variant	rs9314853
Chromosome Location	chr9:79341280-79341281
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10781370	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10781371	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10781375	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10781376	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10869800	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10869801	0.86[AMR][1000 genomes]
rs10869802	0.90[AMR][1000 genomes]
rs10869804	0.82[AMR][1000 genomes]
rs10869805	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10869806	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10869808	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10869810	0.83[EUR][1000 genomes]
rs10869811	0.82[EUR][1000 genomes]
rs10869812	0.82[EUR][1000 genomes]
rs11145011	0.83[ASN][1000 genomes]
rs11145012	0.82[ASN][1000 genomes]
rs11145017	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11145018	0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11145019	0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11145021	0.85[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11145023	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11145032	0.83[AMR][1000 genomes]
rs11145033	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11145035	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11145036	0.84[EUR][1000 genomes]
rs11145038	0.81[EUR][1000 genomes]
rs12238013	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12345014	0.84[EUR][1000 genomes]
rs12349206	0.81[EUR][1000 genomes]
rs12552182	0.90[AMR][1000 genomes]
rs12553799	0.90[AMR][1000 genomes]
rs12683741	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1329014	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1329015	0.90[AMR][1000 genomes]
rs1329016	0.90[AMR][1000 genomes]
rs1329017	0.90[AMR][1000 genomes]
rs1329018	0.90[AMR][1000 genomes]
rs1536820	0.88[MEX][hapmap]
rs1571446	0.83[EUR][1000 genomes]
rs2077181	0.86[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277155	0.85[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.85[ASN][1000 genomes]
rs35141311	0.90[AMR][1000 genomes]
rs3739521	0.81[JPT][hapmap];0.86[MEX][hapmap]
rs3739524	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.83[ASN][1000 genomes]
rs56878970	0.83[EUR][1000 genomes]
rs57347426	0.90[AMR][1000 genomes]
rs57608282	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs577993	0.81[JPT][hapmap]
rs58286902	0.90[AMR][1000 genomes]
rs60820134	0.82[EUR][1000 genomes]
rs626837	0.82[JPT][hapmap]
rs641088	0.81[JPT][hapmap]
rs658548	0.82[JPT][hapmap]
rs683866	0.82[JPT][hapmap]
rs7042953	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs724017	0.87[AMR][1000 genomes]
rs7848492	0.81[EUR][1000 genomes]
rs7864794	0.92[AMR][1000 genomes]
rs9785303	0.85[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893481	chr9:79304043-79348193	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79327800-79341800	Weak transcription	Fetal Stomach	stomach
2	chr9:79333200-79346800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:79333200-79359000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:79333200-79370000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:79333600-79342200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:79333600-79344000	Weak transcription	HSMMtube	muscle
7	chr9:79333800-79342200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:79333800-79347800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:79338200-79343000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:79339400-79341400	Enhancers	Fetal Lung	lung
11	chr9:79339800-79341800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:79340400-79349400	Weak transcription	HSMM	muscle
13	chr9:79340600-79341400	Enhancers	Brain Hippocampus Middle	brain
14	chr9:79340800-79341400	Enhancers	Fetal Brain Male	brain
15	chr9:79340800-79342200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:79341000-79342000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:79341000-79342000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:79341000-79342600	Enhancers	Colon Smooth Muscle	Colon
19	chr9:79341200-79341400	Enhancers	Aorta	Aorta
20	chr9:79341200-79341400	Enhancers	Fetal Brain Female	brain

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