Variant report

Variant	rs1571446
Chromosome Location	chr9:79354218-79354219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10781375	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10781376	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10869808	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10869810	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10869811	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10869812	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11145017	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11145018	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11145019	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs11145021	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11145032	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11145033	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11145035	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11145036	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11145038	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12238013	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12345014	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12349206	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683741	0.82[EUR][1000 genomes]
rs2077181	0.86[JPT][hapmap]
rs2277155	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs3739524	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs56878970	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58570686	0.82[ASN][1000 genomes]
rs60820134	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs626837	0.81[CHB][hapmap]
rs641088	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs658548	0.81[CHB][hapmap]
rs7848492	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9314853	0.83[EUR][1000 genomes]
rs9785303	0.90[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79333200-79359000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:79333200-79370000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:79341400-79360800	Weak transcription	Aorta	Aorta
4	chr9:79348200-79370200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:79348400-79359000	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:79348400-79359200	Weak transcription	HSMMtube	muscle
7	chr9:79348400-79370200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:79348400-79370200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:79348600-79360800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:79353000-79354400	Strong transcription	HSMM	muscle
11	chr9:79353600-79354600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:79354000-79356600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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