Variant report

Variant	rs11145042
Chromosome Location	chr9:79364564-79364565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10217562	1.00[AMR][1000 genomes]
rs11145052	1.00[AMR][1000 genomes]
rs11145065	1.00[AMR][1000 genomes]
rs12006237	1.00[AMR][1000 genomes]
rs12335660	1.00[AMR][1000 genomes]
rs12336582	1.00[AMR][1000 genomes]
rs12336618	1.00[AMR][1000 genomes]
rs12344115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345844	1.00[AMR][1000 genomes]
rs12351780	1.00[AMR][1000 genomes]
rs5003618	1.00[AMR][1000 genomes]
rs9886893	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79333200-79370000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:79348200-79370200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:79348400-79370200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:79348400-79370200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:79358400-79370800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:79359600-79365400	Weak transcription	HSMMtube	muscle
7	chr9:79361000-79365400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:79361200-79396600	Weak transcription	Aorta	Aorta
9	chr9:79362200-79370400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:79362400-79365600	Weak transcription	HSMM	muscle
11	chr9:79363600-79364600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr9:79363800-79364600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:79363800-79364600	Enhancers	Brain Substantia Nigra	brain
14	chr9:79364000-79364600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:79364000-79364600	Enhancers	Brain Cingulate Gyrus	brain
16	chr9:79364000-79366000	Enhancers	Fetal Muscle Leg	muscle
17	chr9:79364200-79364600	Enhancers	Brain Angular Gyrus	brain
18	chr9:79364200-79364800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:79364200-79364800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:79364200-79364800	Enhancers	Colon Smooth Muscle	Colon
21	chr9:79364400-79364800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr9:79364400-79372000	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links