Variant report

Variant	rs11145065
Chromosome Location	chr9:79404644-79404645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10217562	1.00[AMR][1000 genomes]
rs11145042	1.00[AMR][1000 genomes]
rs11145052	1.00[AMR][1000 genomes]
rs12004137	1.00[LWK][hapmap]
rs12006237	1.00[AMR][1000 genomes]
rs12335660	1.00[AMR][1000 genomes]
rs12336582	1.00[AMR][1000 genomes]
rs12336618	1.00[AMR][1000 genomes]
rs12339267	1.00[YRI][hapmap]
rs12339310	1.00[YRI][hapmap]
rs12344115	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345844	1.00[AMR][1000 genomes]
rs12351780	1.00[AMR][1000 genomes]
rs5003618	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9886893	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758190	chr9:79365865-79673907	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759697	chr9:79365865-79673907	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79377000-79408600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:79377200-79405200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:79393600-79423400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:79400400-79423600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:79400800-79419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:79401600-79404800	Weak transcription	HSMMtube	muscle
7	chr9:79402000-79405200	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:79402000-79408200	Weak transcription	Brain Substantia Nigra	brain
9	chr9:79402000-79409200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:79402800-79410000	Weak transcription	Aorta	Aorta
11	chr9:79403000-79409400	Enhancers	Fetal Intestine Large	intestine
12	chr9:79403400-79406200	Enhancers	Fetal Intestine Small	intestine
13	chr9:79403600-79407800	Weak transcription	HSMM	muscle
14	chr9:79403600-79411400	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:79404000-79419200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:79404200-79405000	Enhancers	Small Intestine	intestine
17	chr9:79404200-79406000	Enhancers	Duodenum Mucosa	Duodenum
18	chr9:79404200-79418400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:79404400-79419400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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