Variant report

Variant	rs11150379
Chromosome Location	chr16:81335150-81335151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11639552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11643932	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12103052	0.81[JPT][hapmap]
rs12927652	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs12929924	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs12933277	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs12934500	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs16955063	0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs1820260	0.85[CHB][hapmap]
rs2081263	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35151165	0.82[ASN][1000 genomes]
rs35378839	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56118809	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7188923	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7194094	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs7203482	0.85[CHB][hapmap]
rs918776	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81309200-81345200	Weak transcription	Brain Hippocampus Middle	brain
2	chr16:81328000-81347000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:81328200-81347000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:81328600-81347000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr16:81328800-81344800	Weak transcription	Fetal Intestine Small	intestine
6	chr16:81328800-81345200	Weak transcription	Fetal Intestine Large	intestine
7	chr16:81330600-81344800	Weak transcription	Esophagus	oesophagus
8	chr16:81330600-81347200	Weak transcription	Gastric	stomach
9	chr16:81331600-81344800	Weak transcription	Ovary	ovary
10	chr16:81331600-81347000	Weak transcription	Right Ventricle	heart
11	chr16:81331800-81346400	Weak transcription	Brain Anterior Caudate	brain
12	chr16:81332000-81345400	Weak transcription	Thymus	Thymus
13	chr16:81332200-81346400	Weak transcription	Fetal Stomach	stomach
14	chr16:81332400-81344600	Weak transcription	Brain Angular Gyrus	brain
15	chr16:81332400-81346400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr16:81333200-81346400	Weak transcription	Brain Germinal Matrix	brain
17	chr16:81334400-81346600	Weak transcription	Colon Smooth Muscle	Colon
18	chr16:81334600-81347200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr16:81335000-81335400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links