Variant report

Variant	rs16955063
Chromosome Location	chr16:81368513-81368514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81368268..81371015-chr16:81379390..81381127,2	K562	blood:
2	chr16:81347272..81349638-chr16:81368046..81369872,2	K562	blood:
3	chr16:81346603..81348772-chr16:81366929..81370865,3	K562	blood:
4	chr16:81362410..81365455-chr16:81367102..81371144,3	K562	blood:
5	chr16:81367958..81369708-chr16:81376304..81377925,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261609	Chromatin interaction
ENSG00000260495	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11150379	0.82[ASN][1000 genomes]
rs11639552	0.82[ASN][1000 genomes]
rs11643932	0.84[ASN][1000 genomes]
rs12103052	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12448813	0.92[CEU][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12920172	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12921222	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12925218	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12927652	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12929924	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12933277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12934500	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564116	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1820260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35151165	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35378839	0.84[ASN][1000 genomes]
rs4888145	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4889309	0.96[CEU][hapmap]
rs6564872	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs7188923	0.80[ASN][1000 genomes]
rs7194094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199407	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7199797	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7203482	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7203835	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs729181	0.92[CEU][hapmap]
rs8051314	0.93[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8055288	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8064146	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs918776	0.81[ASN][1000 genomes]
rs9921359	0.92[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9922086	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9934557	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs9938148	0.93[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
5	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
6	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81350000-81371200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:81350000-81372000	Weak transcription	Primary B cells from cord blood	blood
3	chr16:81350000-81373200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr16:81350000-81375000	Weak transcription	Fetal Intestine Large	intestine
5	chr16:81350400-81370400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr16:81350400-81373200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr16:81350600-81372800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr16:81351200-81369800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr16:81351400-81368800	Weak transcription	Dnd41	blood
10	chr16:81351400-81371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr16:81353400-81373200	Weak transcription	HUVEC	blood vessel
12	chr16:81353400-81390400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr16:81353800-81372600	Weak transcription	A549	lung
14	chr16:81354000-81371400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr16:81354200-81391600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr16:81354400-81372800	Weak transcription	HSMM	muscle
17	chr16:81355600-81371600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:81357800-81375800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr16:81358800-81369600	Weak transcription	K562	blood
20	chr16:81358800-81372200	Weak transcription	Right Atrium	heart
21	chr16:81358800-81372400	Weak transcription	Lung	lung
22	chr16:81359000-81369400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:81359000-81370000	Weak transcription	HepG2	liver
24	chr16:81359200-81369000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr16:81359200-81370400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:81359800-81370400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr16:81360600-81371200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr16:81360600-81373000	Weak transcription	Brain Angular Gyrus	brain
29	chr16:81360800-81372000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr16:81361400-81370200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr16:81363000-81372600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr16:81363800-81369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:81363800-81379400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr16:81364000-81369400	Weak transcription	NHEK	skin
35	chr16:81364000-81374600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr16:81364400-81369400	Weak transcription	GM12878-XiMat	blood
37	chr16:81366200-81369200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr16:81366400-81369600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr16:81366400-81369600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr16:81366400-81369600	Weak transcription	Fetal Stomach	stomach
41	chr16:81366400-81372400	Weak transcription	Esophagus	oesophagus
42	chr16:81366400-81373200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr16:81366400-81379200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr16:81366400-81380400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr16:81366600-81369600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:81366600-81374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr16:81367600-81369600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr16:81368000-81368600	Weak transcription	Left Ventricle	heart
49	chr16:81368200-81369600	Weak transcription	Right Ventricle	heart
50	chr16:81368200-81370600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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