Variant report

Variant	rs11150436
Chromosome Location	chr16:82072248-82072249
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs8045403	1.00[EUR][1000 genomes]
rs8054931	1.00[EUR][1000 genomes]
rs8055539	1.00[EUR][1000 genomes]
rs8063114	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82067400-82077000	Weak transcription	Right Atrium	heart
2	chr16:82068000-82072800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr16:82068600-82072600	Active TSS	Placenta	Placenta
4	chr16:82068800-82077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:82069200-82074000	Weak transcription	Fetal Lung	lung
6	chr16:82069200-82076600	Weak transcription	HSMMtube	muscle
7	chr16:82069200-82077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr16:82069400-82075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr16:82070200-82083400	Weak transcription	Colonic Mucosa	Colon
10	chr16:82070800-82074200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr16:82070800-82074800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr16:82070800-82081200	Weak transcription	Pancreas	Pancrea
13	chr16:82071200-82072400	Weak transcription	Fetal Kidney	kidney
14	chr16:82071600-82072800	Enhancers	Fetal Intestine Large	intestine
15	chr16:82071800-82072800	Flanking Active TSS	Liver	Liver
16	chr16:82071800-82073400	Enhancers	Fetal Stomach	stomach
17	chr16:82071800-82077800	Weak transcription	Stomach Mucosa	stomach
18	chr16:82072000-82072800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:82072000-82073000	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr16:82072000-82073200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr16:82072200-82072400	Flanking Active TSS	HepG2	liver
22	chr16:82072200-82072600	Flanking Active TSS	Fetal Intestine Small	intestine
23	chr16:82072200-82072800	Enhancers	Gastric	stomach

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