Variant report

Variant	rs8063114
Chromosome Location	chr16:82064500-82064501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11150436	1.00[EUR][1000 genomes]
rs16956244	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045403	1.00[EUR][1000 genomes]
rs8054931	1.00[EUR][1000 genomes]
rs8055539	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	esv3321716	chr16:82060451-82065049	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82058000-82065600	Weak transcription	Gastric	stomach
2	chr16:82061000-82066600	Weak transcription	Pancreas	Pancrea
3	chr16:82061000-82066800	Weak transcription	Esophagus	oesophagus
4	chr16:82061400-82065000	Weak transcription	HMEC	breast
5	chr16:82062000-82064800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:82062000-82065400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:82062000-82066400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr16:82062000-82066400	Weak transcription	Fetal Intestine Small	intestine
9	chr16:82062000-82066600	Weak transcription	Stomach Mucosa	stomach
10	chr16:82062200-82065000	Weak transcription	NHEK	skin
11	chr16:82062200-82065200	Weak transcription	Liver	Liver
12	chr16:82062200-82066400	Weak transcription	Fetal Intestine Large	intestine
13	chr16:82064000-82065400	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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