Variant report

Variant	rs11153419
Chromosome Location	chr6:113769138-113769139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11756338	0.80[AMR][1000 genomes]
rs12192120	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946727	0.85[EUR][1000 genomes]
rs7341325	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113767800-113769200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:113767800-113769200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:113767800-113770000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:113767800-113771600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:113767800-113772600	Enhancers	NHEK	skin
6	chr6:113768000-113771400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:113768000-113771600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:113768000-113771600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:113768000-113771600	Enhancers	NH-A	brain
10	chr6:113768000-113772200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:113768000-113772200	Enhancers	NHDF-Ad	bronchial
12	chr6:113768000-113772200	Enhancers	NHLF	lung
13	chr6:113768200-113769200	Enhancers	Hela-S3	cervix
14	chr6:113768200-113771600	Enhancers	HUVEC	blood vessel
15	chr6:113768200-113771600	Enhancers	Osteobl	bone
16	chr6:113768200-113772400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:113768400-113769200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:113768400-113770400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:113768400-113772400	Enhancers	HMEC	breast
20	chr6:113768600-113769200	Enhancers	HSMMtube	muscle
21	chr6:113768600-113770000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:113768600-113772400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:113768600-113772400	Enhancers	HSMM	muscle
24	chr6:113768800-113770200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:113768800-113770400	Weak transcription	A549	lung
26	chr6:113768800-113771200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:113768800-113773000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:113769000-113771000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:113769000-113771000	Enhancers	Placenta	Placenta

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