Variant report

Variant	rs7341325
Chromosome Location	chr6:113728558-113728559
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11153419	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11153423	1.00[ASN][1000 genomes]
rs12192120	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193394	1.00[ASN][1000 genomes]
rs12198846	1.00[ASN][1000 genomes]
rs67763055	1.00[ASN][1000 genomes]
rs72946727	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950866	1.00[ASN][1000 genomes]
rs7349894	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113727600-113732400	Weak transcription	Ovary	ovary
3	chr6:113727800-113731000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:113727800-113731400	Weak transcription	Stomach Mucosa	stomach
5	chr6:113727800-113733600	Weak transcription	Fetal Kidney	kidney
6	chr6:113727800-113733800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:113728000-113731000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:113728000-113731000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:113728000-113731000	Weak transcription	Right Atrium	heart
10	chr6:113728000-113732400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:113728200-113730600	Weak transcription	NHDF-Ad	bronchial
12	chr6:113728200-113731000	Weak transcription	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links