Variant report

Variant	rs11153423
Chromosome Location	chr6:113901158-113901159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12192120	1.00[ASN][1000 genomes]
rs12193514	1.00[ASN][1000 genomes]
rs12200632	1.00[ASN][1000 genomes]
rs12209362	1.00[ASN][1000 genomes]
rs67763055	1.00[ASN][1000 genomes]
rs72946727	1.00[ASN][1000 genomes]
rs72950866	1.00[ASN][1000 genomes]
rs72956699	1.00[ASN][1000 genomes]
rs7341325	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113900600-113902600	Weak transcription	Stomach Mucosa	stomach
2	chr6:113900800-113903600	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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