Variant report

Variant	rs12209362
Chromosome Location	chr6:113943911-113943912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11153423	1.00[ASN][1000 genomes]
rs12193514	1.00[ASN][1000 genomes]
rs12200632	1.00[ASN][1000 genomes]
rs12201635	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap]
rs67763055	1.00[ASN][1000 genomes]
rs72950866	1.00[ASN][1000 genomes]
rs72956699	1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12209362	GTF3C6	cis	cerebellum	SCAN
rs12209362	FIG4	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113933000-113952000	Weak transcription	Psoas Muscle	Psoas
2	chr6:113940400-113944800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:113941400-113948000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:113941800-113951000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:113942200-113946600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:113942200-113950200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:113942200-113950600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:113942200-113951000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:113942200-113952200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:113942400-113952800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:113943000-113956400	Weak transcription	Esophagus	oesophagus
12	chr6:113943200-113944000	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:113943200-113944400	Strong transcription	GM12878-XiMat	blood
14	chr6:113943200-113944600	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:113943400-113944200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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