Variant report

Variant	rs12201635
Chromosome Location	chr6:113977306-113977307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12204123	0.88[AFR][1000 genomes]
rs12205015	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56313227	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60286805	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761143	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs7767752	0.83[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12201635	FRK	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113967600-113980600	Weak transcription	Placenta	Placenta
2	chr6:113970800-113977400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:113971400-113981000	Weak transcription	Fetal Intestine Large	intestine
4	chr6:113971600-113979000	Weak transcription	HepG2	liver
5	chr6:113974800-113977600	Enhancers	NHEK	skin
6	chr6:113975000-113982000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:113975400-113981200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:113975600-113977600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:113976000-113980600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:113976000-113990800	Weak transcription	Psoas Muscle	Psoas
11	chr6:113976200-113977400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:113976200-113981000	Weak transcription	Liver	Liver
13	chr6:113976200-113982200	Weak transcription	Stomach Mucosa	stomach
14	chr6:113976200-113982800	Weak transcription	Adipose Nuclei	Adipose
15	chr6:113976800-113977400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:113977200-113977400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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