Variant report

Variant	rs12204123
Chromosome Location	chr6:113986936-113986937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113986306..113987882-chr6:113989407..113992335,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11153430	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11153431	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12190203	0.83[AMR][1000 genomes]
rs12191218	0.80[YRI][hapmap];0.81[AMR][1000 genomes]
rs12191966	0.83[AMR][1000 genomes]
rs12200427	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12200934	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12201635	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs12202351	0.83[YRI][hapmap]
rs12203628	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12205015	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12209179	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12213207	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1481432	1.00[CHB][hapmap]
rs2493882	1.00[CHB][hapmap]
rs2493884	1.00[CHB][hapmap]
rs2493891	1.00[CHB][hapmap]
rs352090	1.00[CHB][hapmap]
rs547797	1.00[CHB][hapmap]
rs60286805	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62415964	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62415965	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62415966	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62415969	0.83[AMR][1000 genomes]
rs62415970	0.83[AMR][1000 genomes]
rs6913809	1.00[CHB][hapmap]
rs6926826	1.00[CHB][hapmap]
rs6927150	1.00[CHB][hapmap]
rs6927480	1.00[CHB][hapmap]
rs6927568	1.00[CHB][hapmap]
rs7753869	1.00[CHB][hapmap]
rs7754686	1.00[CHB][hapmap]
rs7758501	1.00[CHB][hapmap]
rs7758523	1.00[CHB][hapmap]
rs7761143	0.94[YRI][hapmap];0.83[AMR][1000 genomes]
rs7762969	1.00[CHB][hapmap]
rs7767752	0.94[YRI][hapmap];0.83[AMR][1000 genomes]
rs9384880	0.83[AMR][1000 genomes]
rs9387166	0.83[AMR][1000 genomes]
rs9400659	0.83[AMR][1000 genomes]
rs9488238	1.00[CHB][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113976000-113990800	Weak transcription	Psoas Muscle	Psoas
2	chr6:113982400-113993600	Weak transcription	Placenta	Placenta
3	chr6:113983000-113993800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:113984000-113989800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:113984200-113993200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:113984600-113989400	Weak transcription	HepG2	liver
7	chr6:113984600-113993800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:113985000-113990200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:113985600-113990200	Weak transcription	Fetal Stomach	stomach
10	chr6:113985600-113990800	Weak transcription	Ovary	ovary
11	chr6:113986000-113989400	Weak transcription	Fetal Lung	lung
12	chr6:113986800-113987200	Enhancers	GM12878-XiMat	blood

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