Variant report

Variant	rs6927568
Chromosome Location	chr6:114025900-114025901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10046248	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1481432	1.00[CHB][hapmap]
rs2493882	1.00[CHB][hapmap]
rs2493884	1.00[CHB][hapmap]
rs2493891	1.00[CHB][hapmap]
rs352090	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs547797	1.00[CHB][hapmap]
rs56692151	0.83[AMR][1000 genomes]
rs56720108	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57214620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57618497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57757628	0.83[AMR][1000 genomes]
rs59034828	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59759007	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60220217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61692835	1.00[AMR][1000 genomes]
rs6908020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6913809	1.00[CHB][hapmap]
rs6926826	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6927150	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6927480	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6927485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6938123	0.83[AMR][1000 genomes]
rs73541817	1.00[AMR][1000 genomes]
rs73541821	1.00[AMR][1000 genomes]
rs73541822	1.00[AMR][1000 genomes]
rs73541825	1.00[AMR][1000 genomes]
rs73541827	1.00[AMR][1000 genomes]
rs73541901	0.83[AMR][1000 genomes]
rs73543707	0.83[AMR][1000 genomes]
rs73543715	0.83[AMR][1000 genomes]
rs73543717	0.83[AMR][1000 genomes]
rs73543719	0.83[AMR][1000 genomes]
rs73543724	0.83[AMR][1000 genomes]
rs73543728	0.83[AMR][1000 genomes]
rs73543730	0.83[AMR][1000 genomes]
rs73543732	0.83[AMR][1000 genomes]
rs73543737	1.00[AMR][1000 genomes]
rs73543740	1.00[AMR][1000 genomes]
rs73543742	1.00[AMR][1000 genomes]
rs7740723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7757720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7758501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7758645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7758656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7762969	1.00[CHB][hapmap]
rs9488238	1.00[CHB][hapmap]
rs9488240	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114024000-114029800	Weak transcription	Rectal Mucosa Donor 31	rectum

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