Variant report

Variant	rs73541901
Chromosome Location	chr6:114031546-114031547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs56692151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56720108	0.83[AMR][1000 genomes]
rs57214620	0.83[AMR][1000 genomes]
rs57618497	0.83[AMR][1000 genomes]
rs57757628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59034828	0.83[AMR][1000 genomes]
rs59759007	0.83[AMR][1000 genomes]
rs60220217	0.83[AMR][1000 genomes]
rs61692835	0.83[AMR][1000 genomes]
rs6908020	0.83[AMR][1000 genomes]
rs6926826	0.83[AMR][1000 genomes]
rs6927150	0.83[AMR][1000 genomes]
rs6927480	0.83[AMR][1000 genomes]
rs6927485	0.83[AMR][1000 genomes]
rs6927568	0.83[AMR][1000 genomes]
rs6938123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541817	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73541821	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73541822	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73541825	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73541827	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543724	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543730	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543737	0.83[AMR][1000 genomes]
rs73543740	0.83[AMR][1000 genomes]
rs73543742	0.83[AMR][1000 genomes]
rs7740723	0.83[AMR][1000 genomes]
rs7757720	0.83[AMR][1000 genomes]
rs7758501	0.83[AMR][1000 genomes]
rs7758645	0.83[AMR][1000 genomes]
rs7758656	0.83[AMR][1000 genomes]
rs9488240	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114028800-114032200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:114030200-114040000	Weak transcription	Stomach Mucosa	stomach
3	chr6:114031000-114031600	Enhancers	Fetal Intestine Large	intestine
4	chr6:114031000-114031800	Enhancers	Fetal Intestine Small	intestine
5	chr6:114031000-114032000	Enhancers	Fetal Brain Male	brain
6	chr6:114031200-114031600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr6:114031400-114031600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:114031400-114031600	Enhancers	HepG2	liver
9	chr6:114031400-114031800	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr6:114031400-114032400	Enhancers	Sigmoid Colon	Sigmoid Colon

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