Variant report

Variant	rs73541817
Chromosome Location	chr6:114028719-114028720
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs56692151	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56720108	1.00[AMR][1000 genomes]
rs57214620	1.00[AMR][1000 genomes]
rs57618497	1.00[AMR][1000 genomes]
rs57757628	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59034828	1.00[AMR][1000 genomes]
rs59759007	1.00[AMR][1000 genomes]
rs60220217	1.00[AMR][1000 genomes]
rs61692835	1.00[AMR][1000 genomes]
rs6908020	1.00[AMR][1000 genomes]
rs6926826	1.00[AMR][1000 genomes]
rs6927150	1.00[AMR][1000 genomes]
rs6927480	1.00[AMR][1000 genomes]
rs6927485	1.00[AMR][1000 genomes]
rs6927568	1.00[AMR][1000 genomes]
rs6938123	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73541821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541901	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543707	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543715	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543717	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543719	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543724	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543728	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543730	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543732	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73543737	1.00[AMR][1000 genomes]
rs73543740	1.00[AMR][1000 genomes]
rs73543742	1.00[AMR][1000 genomes]
rs7740723	1.00[AMR][1000 genomes]
rs7757720	1.00[AMR][1000 genomes]
rs7758501	1.00[AMR][1000 genomes]
rs7758645	1.00[AMR][1000 genomes]
rs7758656	1.00[AMR][1000 genomes]
rs9488240	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114024000-114029800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:114028200-114028800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:114028200-114028800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:114028200-114028800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:114028200-114029000	Enhancers	HSMMtube	muscle
6	chr6:114028400-114029200	Enhancers	Sigmoid Colon	Sigmoid Colon

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