Variant report

Variant	rs6913809
Chromosome Location	chr6:113850972-113850973
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:113850206-113850986	SK-N-SH	brain:	n/a	chr6:113850364-113850371 chr6:113850362-113850372 chr6:113850364-113850371 chr6:113850364-113850371 chr6:113850357-113850378 chr6:113850364-113850374 chr6:113850359-113850375
2	GATA3	chr6:113850184-113851005	SK-N-SH	brain:	n/a	chr6:113850364-113850371 chr6:113850362-113850372 chr6:113850364-113850371 chr6:113850364-113850371 chr6:113850357-113850378 chr6:113850364-113850374 chr6:113850359-113850375
3	STAT3	chr6:113850235-113850982	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr6:113850336-113851136	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113847511..113849509-chr6:113849941..113851506,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236347	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1481432	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075218	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17075221	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1904994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2493884	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2493885	1.00[EUR][1000 genomes]
rs2493891	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3963300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4337960	1.00[EUR][1000 genomes]
rs531979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547797	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56303196	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57194334	1.00[EUR][1000 genomes]
rs58875635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58891033	1.00[EUR][1000 genomes]
rs59844934	1.00[EUR][1000 genomes]
rs59950054	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60295562	1.00[EUR][1000 genomes]
rs60504130	1.00[EUR][1000 genomes]
rs61320559	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61734440	0.94[ASN][1000 genomes]
rs6926011	1.00[EUR][1000 genomes]
rs6926826	1.00[CHB][hapmap]
rs6927150	1.00[CHB][hapmap]
rs6927480	1.00[CHB][hapmap]
rs6927568	1.00[CHB][hapmap]
rs6935853	1.00[ASN][1000 genomes]
rs6942149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73531703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73531704	1.00[ASN][1000 genomes]
rs73531705	1.00[ASN][1000 genomes]
rs73531708	1.00[ASN][1000 genomes]
rs73531717	1.00[ASN][1000 genomes]
rs73547807	0.88[ASN][1000 genomes]
rs73547876	0.88[ASN][1000 genomes]
rs73547891	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73549618	1.00[ASN][1000 genomes]
rs73549630	1.00[ASN][1000 genomes]
rs73549634	1.00[ASN][1000 genomes]
rs73549650	1.00[ASN][1000 genomes]
rs73549652	0.89[ASN][1000 genomes]
rs73549655	1.00[ASN][1000 genomes]
rs73765222	0.88[ASN][1000 genomes]
rs73765224	1.00[EUR][1000 genomes]
rs73765225	1.00[EUR][1000 genomes]
rs73765232	0.88[ASN][1000 genomes]
rs73765247	1.00[EUR][1000 genomes]
rs73765248	1.00[ASN][1000 genomes]
rs73765256	1.00[EUR][1000 genomes]
rs73765261	1.00[EUR][1000 genomes]
rs73765266	1.00[EUR][1000 genomes]
rs73765267	1.00[EUR][1000 genomes]
rs73765271	1.00[EUR][1000 genomes]
rs73765272	1.00[EUR][1000 genomes]
rs73765273	1.00[EUR][1000 genomes]
rs73765283	1.00[EUR][1000 genomes]
rs7745709	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7749447	1.00[EUR][1000 genomes]
rs7752840	1.00[EUR][1000 genomes]
rs7753356	0.88[ASN][1000 genomes]
rs7753869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7754686	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7758501	1.00[CHB][hapmap]
rs7758523	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7759659	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762969	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488238	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113846800-113851800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:113847800-113851000	Enhancers	Fetal Heart	heart
3	chr6:113849600-113852400	Enhancers	HMEC	breast
4	chr6:113849800-113851400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:113850000-113851000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:113850000-113851000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:113850000-113851200	Enhancers	NHEK	skin
8	chr6:113850200-113852400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:113850200-113852400	Enhancers	NHDF-Ad	bronchial
10	chr6:113850200-113852600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:113850400-113852000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:113850600-113851000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:113850600-113851000	Enhancers	NHLF	lung
14	chr6:113850800-113852000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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