Variant report

Variant	rs7754686
Chromosome Location	chr6:113811299-113811300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113809466..113812026-chr6:113961863..113964476,2	MCF-7	breast:
2	chr6:113808573..113811425-chr6:114177780..114182240,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1481432	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1585973	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1600767	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17075218	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904994	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1982686	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2179113	0.81[ASN][1000 genomes]
rs2493882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2493884	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493885	1.00[EUR][1000 genomes]
rs2493891	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3963300	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4337960	1.00[EUR][1000 genomes]
rs531979	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs547797	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs549875	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56303196	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57194334	1.00[EUR][1000 genomes]
rs58875635	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58891033	1.00[EUR][1000 genomes]
rs59844934	1.00[EUR][1000 genomes]
rs59950054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60295562	1.00[EUR][1000 genomes]
rs60504130	1.00[EUR][1000 genomes]
rs61320559	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61734440	0.82[ASN][1000 genomes]
rs6910647	0.81[ASN][1000 genomes]
rs6913809	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6926011	1.00[EUR][1000 genomes]
rs6935853	0.88[ASN][1000 genomes]
rs6942149	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73531703	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73531704	0.88[ASN][1000 genomes]
rs73531705	0.88[ASN][1000 genomes]
rs73531708	0.88[ASN][1000 genomes]
rs73531717	0.88[ASN][1000 genomes]
rs73543899	0.81[ASN][1000 genomes]
rs73547807	1.00[ASN][1000 genomes]
rs73547876	1.00[ASN][1000 genomes]
rs73547891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549618	0.88[ASN][1000 genomes]
rs73549630	0.88[ASN][1000 genomes]
rs73549634	0.88[ASN][1000 genomes]
rs73549650	0.88[ASN][1000 genomes]
rs73549655	0.88[ASN][1000 genomes]
rs73765222	1.00[ASN][1000 genomes]
rs73765224	1.00[EUR][1000 genomes]
rs73765225	1.00[EUR][1000 genomes]
rs73765232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73765247	1.00[EUR][1000 genomes]
rs73765248	0.88[ASN][1000 genomes]
rs73765256	1.00[EUR][1000 genomes]
rs73765261	1.00[EUR][1000 genomes]
rs73765266	1.00[EUR][1000 genomes]
rs73765267	1.00[EUR][1000 genomes]
rs73765271	1.00[EUR][1000 genomes]
rs73765272	1.00[EUR][1000 genomes]
rs73765273	1.00[EUR][1000 genomes]
rs73765283	1.00[EUR][1000 genomes]
rs7745709	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749447	1.00[EUR][1000 genomes]
rs7752840	1.00[EUR][1000 genomes]
rs7753356	1.00[ASN][1000 genomes]
rs7753869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758523	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759659	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7762969	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9320461	0.81[ASN][1000 genomes]
rs9481370	0.88[ASN][1000 genomes]
rs9488197	0.81[ASN][1000 genomes]
rs9488203	0.88[ASN][1000 genomes]
rs9488204	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113808200-113811400	Weak transcription	Placenta	Placenta
2	chr6:113809800-113811400	Enhancers	Colon Smooth Muscle	Colon
3	chr6:113810000-113811800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:113810200-113811600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:113810200-113811600	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:113810400-113812800	Enhancers	Liver	Liver
7	chr6:113810600-113811800	Enhancers	Osteobl	bone
8	chr6:113810600-113813400	Enhancers	Hela-S3	cervix
9	chr6:113810800-113811600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr6:113811000-113811600	Enhancers	HUVEC	blood vessel

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