Variant report

Variant	rs9488204
Chromosome Location	chr6:113797678-113797679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1481432	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs1538460	1.00[MEX][hapmap]
rs17075218	0.88[ASN][1000 genomes]
rs17075221	0.88[ASN][1000 genomes]
rs2179113	0.94[ASN][1000 genomes]
rs2493882	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2493884	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2493891	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2493892	1.00[AMR][1000 genomes]
rs4945952	1.00[AMR][1000 genomes]
rs547797	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs56303196	0.88[ASN][1000 genomes]
rs59950054	0.88[ASN][1000 genomes]
rs6910647	0.94[ASN][1000 genomes]
rs6913809	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs73543899	0.94[ASN][1000 genomes]
rs73547807	0.88[ASN][1000 genomes]
rs73547876	0.88[ASN][1000 genomes]
rs73547891	0.88[ASN][1000 genomes]
rs73765222	0.88[ASN][1000 genomes]
rs73765232	0.88[ASN][1000 genomes]
rs7745709	0.88[ASN][1000 genomes]
rs7753356	0.88[ASN][1000 genomes]
rs7753869	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7754686	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7758523	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7762969	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs9320461	0.94[ASN][1000 genomes]
rs9374413	1.00[MEX][hapmap]
rs9481351	1.00[YRI][hapmap]
rs9481354	1.00[AMR][1000 genomes]
rs9481370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9488175	1.00[YRI][hapmap]
rs9488178	1.00[AMR][1000 genomes]
rs9488182	1.00[YRI][hapmap]
rs9488185	1.00[AMR][1000 genomes]
rs9488197	0.94[ASN][1000 genomes]
rs9488203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113792400-113797800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:113796400-113799200	Enhancers	Adipose Nuclei	Adipose
3	chr6:113796600-113798200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:113796800-113798800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:113797000-113798800	Enhancers	Osteobl	bone
6	chr6:113797200-113798800	Weak transcription	Pancreas	Pancrea
7	chr6:113797400-113798400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:113797600-113798400	Enhancers	HMEC	breast
9	chr6:113797600-113799200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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