Variant report

Variant	rs9320461
Chromosome Location	chr6:113789915-113789916
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17075218	0.81[ASN][1000 genomes]
rs17075221	0.81[ASN][1000 genomes]
rs2179113	1.00[ASN][1000 genomes]
rs2493884	0.81[ASN][1000 genomes]
rs56303196	0.81[ASN][1000 genomes]
rs588674	1.00[EUR][1000 genomes]
rs590058	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59950054	0.81[ASN][1000 genomes]
rs619595	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs682746	1.00[EUR][1000 genomes]
rs6910647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940815	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941591	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543899	1.00[ASN][1000 genomes]
rs73547807	0.81[ASN][1000 genomes]
rs73547876	0.81[ASN][1000 genomes]
rs73547891	0.81[ASN][1000 genomes]
rs73765222	0.81[ASN][1000 genomes]
rs73765232	0.81[ASN][1000 genomes]
rs7745709	0.81[ASN][1000 genomes]
rs7753356	0.81[ASN][1000 genomes]
rs7753869	0.81[ASN][1000 genomes]
rs7754686	0.81[ASN][1000 genomes]
rs7758523	0.81[ASN][1000 genomes]
rs9481346	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481349	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481350	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481351	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481370	0.94[ASN][1000 genomes]
rs9488162	1.00[EUR][1000 genomes]
rs9488166	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488170	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488175	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488179	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488180	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488182	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488183	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488186	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488197	1.00[ASN][1000 genomes]
rs9488203	0.94[ASN][1000 genomes]
rs9488204	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113786600-113791800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:113787000-113791200	Weak transcription	Osteobl	bone
3	chr6:113787200-113791800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:113787400-113791600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links