Variant report
| Variant | rs9488180 |
|---|---|
| Chromosome Location | chr6:113742799-113742800 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:113741733..113746480-chr6:113749879..113754068,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000232316 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17075131 | 0.90[AFR][1000 genomes] |
| rs588674 | 1.00[EUR][1000 genomes] |
| rs590058 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs619595 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs682746 | 1.00[EUR][1000 genomes] |
| rs6910647 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6940815 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6941591 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9320461 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9481346 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9481349 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9481350 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9481351 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9488162 | 1.00[EUR][1000 genomes] |
| rs9488166 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9488170 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9488175 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9488179 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9488182 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9488183 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9488186 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916294 | chr6:113518489-113904305 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034256 | chr6:113703567-113793790 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1021815 | chr6:113703567-113799956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:113736000-113747200 | Weak transcription | HMEC | breast |
