Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113735341..113737235-chr6:113752412..113754611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232316	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs588674	1.00[EUR][1000 genomes]
rs590058	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs619595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs682746	1.00[EUR][1000 genomes]
rs6910647	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940815	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941591	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9320461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481346	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481349	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488162	1.00[EUR][1000 genomes]
rs9488166	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488170	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488175	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488180	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488183	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113731200-113737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:113733400-113738400	Enhancers	NHDF-Ad	bronchial
4	chr6:113733800-113738200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:113733800-113738200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:113734200-113737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:113735400-113738000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:113735600-113738200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:113736000-113737200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:113736000-113747200	Weak transcription	HMEC	breast
11	chr6:113736200-113737200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:113736200-113737200	Weak transcription	Osteobl	bone
13	chr6:113736200-113738200	Weak transcription	NHEK	skin
14	chr6:113736400-113737200	Enhancers	HSMM	muscle

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