Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs588674	1.00[EUR][1000 genomes]
rs590058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs619595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs634198	1.00[AFR][1000 genomes]
rs682746	1.00[EUR][1000 genomes]
rs6910647	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940815	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9320461	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481350	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481351	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488162	1.00[EUR][1000 genomes]
rs9488170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488175	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488179	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488180	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488182	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488183	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488186	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113707400-113717600	Weak transcription	Osteobl	bone
2	chr6:113712200-113717000	Weak transcription	Ovary	ovary
3	chr6:113712200-113717200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:113714400-113717200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:113714400-113717600	Weak transcription	NHDF-Ad	bronchial
6	chr6:113714800-113717000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:113715600-113718800	Enhancers	Fetal Lung	lung
8	chr6:113716000-113718200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:113716200-113717600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:113716400-113718200	Enhancers	Fetal Muscle Leg	muscle
11	chr6:113716800-113717200	Enhancers	HUVEC	blood vessel
12	chr6:113716800-113717400	Enhancers	Brain Germinal Matrix	brain
13	chr6:113716800-113718200	Enhancers	Left Ventricle	heart
14	chr6:113716800-113719000	Enhancers	Fetal Stomach	stomach

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