Variant report

Variant	rs6910647
Chromosome Location	chr6:113786984-113786985
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1481432	1.00[CHB][hapmap]
rs17075218	0.81[ASN][1000 genomes]
rs17075221	0.81[ASN][1000 genomes]
rs2179113	1.00[ASN][1000 genomes]
rs2493882	1.00[CHB][hapmap]
rs2493884	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2493891	1.00[CHB][hapmap]
rs547797	1.00[CHB][hapmap]
rs56303196	0.81[ASN][1000 genomes]
rs588674	1.00[EUR][1000 genomes]
rs590058	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59950054	0.81[ASN][1000 genomes]
rs619595	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs682746	1.00[EUR][1000 genomes]
rs6913809	1.00[CHB][hapmap]
rs6940815	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941591	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543899	1.00[ASN][1000 genomes]
rs73547807	0.81[ASN][1000 genomes]
rs73547876	0.81[ASN][1000 genomes]
rs73547891	0.81[ASN][1000 genomes]
rs73765222	0.81[ASN][1000 genomes]
rs73765232	0.81[ASN][1000 genomes]
rs7745709	0.81[ASN][1000 genomes]
rs7753356	0.81[ASN][1000 genomes]
rs7753869	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7754686	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7758523	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7762969	1.00[CHB][hapmap]
rs9320461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481346	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481349	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481350	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481351	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481370	0.94[ASN][1000 genomes]
rs9488162	1.00[EUR][1000 genomes]
rs9488166	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488170	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488175	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488179	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488180	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488182	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488183	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488186	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9488197	1.00[ASN][1000 genomes]
rs9488203	0.94[ASN][1000 genomes]
rs9488204	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113785000-113787000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:113785000-113787200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113785200-113788800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:113785200-113788800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:113785400-113787000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:113785400-113787000	Enhancers	HMEC	breast
7	chr6:113785400-113787000	Enhancers	HUVEC	blood vessel
8	chr6:113785400-113787000	Enhancers	NHEK	skin
9	chr6:113785400-113787000	Enhancers	NHLF	lung
10	chr6:113785400-113787000	Enhancers	Osteobl	bone
11	chr6:113785400-113787200	Enhancers	Hela-S3	cervix
12	chr6:113785400-113787400	Enhancers	NHDF-Ad	bronchial
13	chr6:113785400-113787800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:113785600-113787000	Enhancers	A549	lung
15	chr6:113785600-113787000	Enhancers	NH-A	brain
16	chr6:113786000-113787000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:113786400-113789000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:113786600-113791800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:113786800-113787000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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