Variant report
| Variant | rs9481370 |
|---|---|
| Chromosome Location | chr6:113796497-113796498 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1481432 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs17075218 | 0.88[ASN][1000 genomes] |
| rs17075221 | 0.88[ASN][1000 genomes] |
| rs2179113 | 0.94[ASN][1000 genomes] |
| rs2493882 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs2493884 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2493891 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs2493892 | 1.00[AMR][1000 genomes] |
| rs4945952 | 1.00[AMR][1000 genomes] |
| rs547797 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs56303196 | 0.88[ASN][1000 genomes] |
| rs59950054 | 0.88[ASN][1000 genomes] |
| rs6910647 | 0.94[ASN][1000 genomes] |
| rs6913809 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs73543899 | 0.94[ASN][1000 genomes] |
| rs73547807 | 0.88[ASN][1000 genomes] |
| rs73547876 | 0.88[ASN][1000 genomes] |
| rs73547891 | 0.88[ASN][1000 genomes] |
| rs73765222 | 0.88[ASN][1000 genomes] |
| rs73765232 | 0.88[ASN][1000 genomes] |
| rs7745709 | 0.88[ASN][1000 genomes] |
| rs7753356 | 0.88[ASN][1000 genomes] |
| rs7753869 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7754686 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7758523 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7762969 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs9320461 | 0.94[ASN][1000 genomes] |
| rs9481351 | 1.00[YRI][hapmap] |
| rs9481354 | 1.00[AMR][1000 genomes] |
| rs9488175 | 1.00[YRI][hapmap] |
| rs9488178 | 1.00[AMR][1000 genomes] |
| rs9488182 | 1.00[YRI][hapmap] |
| rs9488185 | 1.00[AMR][1000 genomes] |
| rs9488197 | 0.94[ASN][1000 genomes] |
| rs9488203 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9488204 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916294 | chr6:113518489-113904305 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1021815 | chr6:113703567-113799956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv518991 | chr6:113760526-113799618 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv522088 | chr6:113788356-113809585 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:113791800-113797000 | Weak transcription | Osteobl | bone |
| 2 | chr6:113792000-113797600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 3 | chr6:113792400-113797800 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 4 | chr6:113796400-113799200 | Enhancers | Adipose Nuclei | Adipose |
