Variant report

Variant	rs9481354
Chromosome Location	chr6:113771993-113771994
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113753938..113755617-chr6:113771103..113773814,2	MCF-7	breast:
2	chr6:113753858..113756059-chr6:113770303..113773626,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232316	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2493892	1.00[AMR][1000 genomes]
rs4945952	1.00[AMR][1000 genomes]
rs9481370	1.00[AMR][1000 genomes]
rs9488178	1.00[AMR][1000 genomes]
rs9488185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488203	1.00[AMR][1000 genomes]
rs9488204	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113767800-113772600	Enhancers	NHEK	skin
2	chr6:113768000-113772200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:113768000-113772200	Enhancers	NHDF-Ad	bronchial
4	chr6:113768000-113772200	Enhancers	NHLF	lung
5	chr6:113768200-113772400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:113768400-113772400	Enhancers	HMEC	breast
7	chr6:113768600-113772400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:113768600-113772400	Enhancers	HSMM	muscle
9	chr6:113768800-113773000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:113769200-113772000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:113769400-113772400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:113769800-113772600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:113769800-113777800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:113770000-113778200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:113771000-113772000	Weak transcription	Placenta	Placenta
16	chr6:113771000-113772600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:113771200-113772400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:113771400-113772000	Weak transcription	HSMMtube	muscle
19	chr6:113771400-113772200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:113771400-113772600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:113771400-113777800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:113771400-113779400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:113771600-113772400	Weak transcription	Fetal Lung	lung
24	chr6:113771600-113777800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:113771600-113782400	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:113771800-113772400	Weak transcription	Monocytes-CD14+_RO01746	blood

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