Variant report

Variant	rs4945952
Chromosome Location	chr6:113807541-113807542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2493892	1.00[AMR][1000 genomes]
rs9481351	1.00[YRI][hapmap]
rs9481354	1.00[AMR][1000 genomes]
rs9481370	1.00[AMR][1000 genomes]
rs9488175	1.00[YRI][hapmap]
rs9488178	1.00[AMR][1000 genomes]
rs9488182	1.00[YRI][hapmap]
rs9488185	1.00[AMR][1000 genomes]
rs9488203	1.00[AMR][1000 genomes]
rs9488204	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113801200-113810200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:113807200-113807800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:113807200-113808000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:113807200-113808200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr6:113807200-113808200	Enhancers	Placenta	Placenta
6	chr6:113807400-113807600	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links