Variant report

Variant	rs2493892
Chromosome Location	chr6:113860333-113860334
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1538460	1.00[MEX][hapmap]
rs4945952	1.00[AMR][1000 genomes]
rs9374413	1.00[MEX][hapmap]
rs9481354	1.00[AMR][1000 genomes]
rs9481370	1.00[AMR][1000 genomes]
rs9488178	1.00[AMR][1000 genomes]
rs9488185	1.00[AMR][1000 genomes]
rs9488203	1.00[AMR][1000 genomes]
rs9488204	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv981078	chr6:113851437-113874497	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113859800-113861000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:113859800-113861000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:113859800-113861000	Enhancers	HSMMtube	muscle
4	chr6:113859800-113861600	Enhancers	Fetal Heart	heart
5	chr6:113859800-113862200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:113860000-113860400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:113860000-113860600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:113860000-113861000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:113860000-113861000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:113860000-113862200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:113860000-113862400	Enhancers	NHDF-Ad	bronchial
12	chr6:113860000-113862400	Enhancers	Osteobl	bone
13	chr6:113860200-113860400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr6:113860200-113860600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:113860200-113860800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:113860200-113860800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:113860200-113860800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:113860200-113860800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:113860200-113860800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:113860200-113860800	Enhancers	HSMM	muscle
21	chr6:113860200-113860800	Enhancers	NHLF	lung
22	chr6:113860200-113861200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:113860200-113862200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:113860200-113862200	Enhancers	NH-A	brain

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