Variant report

Variant	rs9374413
Chromosome Location	chr6:113974057-113974058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113973300..113975727-chr6:114178207..114180740,3	MCF-7	breast:
2	chr6:113973673..113976294-chr6:114178537..114180180,2	MCF-7	breast:
3	chr6:113966781..113968914-chr6:113973487..113975811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10732719	0.81[AFR][1000 genomes]
rs11153426	0.84[AFR][1000 genomes]
rs1339040	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs1538460	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2003888	0.83[AFR][1000 genomes]
rs2127989	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4945962	0.84[AFR][1000 genomes]
rs6911610	1.00[AFR][1000 genomes]
rs6925360	0.81[AFR][1000 genomes]
rs6930982	0.84[AFR][1000 genomes]
rs6940419	0.88[AFR][1000 genomes]
rs9374414	0.86[AFR][1000 genomes]
rs9384877	0.86[AFR][1000 genomes]
rs9387158	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs9387163	1.00[AFR][1000 genomes]
rs9400646	0.81[AFR][1000 genomes]
rs9400647	0.84[AFR][1000 genomes]
rs9400655	0.81[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9374413	MARCKS	cis	lymphoblastoid	seeQTL

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113967400-113975600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:113967600-113980600	Weak transcription	Placenta	Placenta
3	chr6:113970200-113975000	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:113970800-113975600	Weak transcription	Small Intestine	intestine
5	chr6:113970800-113975800	Weak transcription	Aorta	Aorta
6	chr6:113970800-113977400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:113971000-113975600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:113971200-113974800	Weak transcription	Liver	Liver
9	chr6:113971200-113975400	Weak transcription	Osteobl	bone
10	chr6:113971200-113976000	Weak transcription	Adipose Nuclei	Adipose
11	chr6:113971400-113974800	Enhancers	GM12878-XiMat	blood
12	chr6:113971400-113981000	Weak transcription	Fetal Intestine Large	intestine
13	chr6:113971600-113974800	Weak transcription	Stomach Mucosa	stomach
14	chr6:113971600-113974800	Weak transcription	A549	lung
15	chr6:113971600-113975200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:113971600-113979000	Weak transcription	HepG2	liver
17	chr6:113972000-113974400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:113972400-113975000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:113972600-113974600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:113972600-113974800	Weak transcription	HMEC	breast
21	chr6:113972600-113975000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:113972600-113975600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:113972600-113975600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:113972600-113975600	Weak transcription	Gastric	stomach
25	chr6:113972600-113976000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:113972800-113974600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:113972800-113974800	Weak transcription	NHEK	skin
28	chr6:113972800-113975000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:113972800-113975200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:113972800-113975200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:113972800-113975600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:113972800-113975600	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:113972800-113975600	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:113972800-113975600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:113973400-113974800	Weak transcription	Fetal Intestine Small	intestine

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