Variant report

Variant	rs2003888
Chromosome Location	chr6:113966531-113966532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113964552..113967035-chr6:114182588..114184413,2	MCF-7	breast:
2	chr6:113962572..113972353-chr6:114176344..114182135,15	MCF-7	breast:
3	chr6:113963984..113967519-chr6:114178085..114180547,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

rs_ID	r²[population]
rs10732719	1.00[AMR][1000 genomes]
rs11153426	1.00[AMR][1000 genomes]
rs1339040	1.00[AMR][1000 genomes]
rs1339041	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1383805	0.83[AMR][1000 genomes]
rs1481433	0.83[AMR][1000 genomes]
rs1538460	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2127989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4632923	1.00[AMR][1000 genomes]
rs4945500	0.83[AMR][1000 genomes]
rs4945960	0.83[AMR][1000 genomes]
rs4945961	0.83[AMR][1000 genomes]
rs4945962	1.00[AMR][1000 genomes]
rs6911610	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6917191	1.00[AMR][1000 genomes]
rs6925360	1.00[AMR][1000 genomes]
rs6930982	1.00[AMR][1000 genomes]
rs6940419	0.83[AMR][1000 genomes]
rs922722	1.00[AMR][1000 genomes]
rs9320466	0.83[AMR][1000 genomes]
rs9374409	0.83[AMR][1000 genomes]
rs9374413	0.83[AFR][1000 genomes]
rs9384877	0.92[AFR][1000 genomes]
rs9387158	1.00[AMR][1000 genomes]
rs9387163	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400646	1.00[AMR][1000 genomes]
rs9400647	1.00[AMR][1000 genomes]
rs9400648	0.83[AMR][1000 genomes]
rs9400655	1.00[AMR][1000 genomes]

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:113954600-113970400	Weak transcription	Right Atrium	heart
3	chr6:113959400-113972000	Weak transcription	Gastric	stomach
4	chr6:113960800-113967600	Enhancers	Fetal Intestine Small	intestine
5	chr6:113962600-113967600	Enhancers	Fetal Intestine Large	intestine
6	chr6:113963600-113967600	Enhancers	Fetal Heart	heart
7	chr6:113963600-113967600	Enhancers	Placenta	Placenta
8	chr6:113964000-113967400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:113964000-113967400	Enhancers	HepG2	liver
10	chr6:113964000-113967600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:113964000-113968000	Weak transcription	Primary B cells from cord blood	blood
12	chr6:113964000-113969800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:113964200-113966600	Weak transcription	Pancreas	Pancrea
14	chr6:113964200-113967000	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:113964400-113968400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:113964400-113970200	Weak transcription	Adipose Nuclei	Adipose
17	chr6:113964600-113966600	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:113964600-113966800	Weak transcription	Fetal Thymus	thymus
19	chr6:113964600-113970600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:113964600-113970600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:113964800-113966800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:113964800-113967400	Enhancers	Stomach Mucosa	stomach
23	chr6:113964800-113967400	Enhancers	A549	lung
24	chr6:113964800-113968200	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr6:113964800-113969800	Weak transcription	Liver	Liver
26	chr6:113964800-113972400	Weak transcription	Fetal Lung	lung
27	chr6:113965000-113966600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:113965000-113971200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:113965200-113967000	Enhancers	Small Intestine	intestine
30	chr6:113965200-113967400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:113965200-113967400	Enhancers	NHDF-Ad	bronchial
32	chr6:113965200-113967600	Enhancers	NH-A	brain
33	chr6:113965200-113968000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:113965200-113968000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:113965200-113970000	Enhancers	NHEK	skin
36	chr6:113965400-113967200	Enhancers	HSMM	muscle
37	chr6:113965400-113967200	Enhancers	HSMMtube	muscle
38	chr6:113965400-113967400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:113965400-113967600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:113965400-113967600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:113965600-113970000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:113965800-113966800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:113965800-113967200	Enhancers	NHLF	lung
44	chr6:113965800-113967600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr6:113965800-113967600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:113965800-113967600	Enhancers	HMEC	breast
47	chr6:113966000-113967000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr6:113966000-113967400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:113966200-113966600	Enhancers	GM12878-XiMat	blood
50	chr6:113966200-113967200	Weak transcription	Placenta Amnion	Placenta Amnion

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