Variant report

Variant	rs1339041
Chromosome Location	chr6:113933507-113933508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10732719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11153426	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1339040	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1383805	0.83[AMR][1000 genomes]
rs1481433	0.83[AMR][1000 genomes]
rs1538460	1.00[AMR][1000 genomes]
rs2003888	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2127989	1.00[AMR][1000 genomes]
rs422286	0.83[AFR][1000 genomes]
rs4632923	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4945500	0.83[AMR][1000 genomes]
rs4945960	0.83[AMR][1000 genomes]
rs4945961	0.83[AMR][1000 genomes]
rs4945962	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911610	1.00[AMR][1000 genomes]
rs6917191	1.00[AMR][1000 genomes]
rs6925360	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930982	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940419	0.83[AMR][1000 genomes]
rs922722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9320466	0.83[AMR][1000 genomes]
rs9374409	0.83[AMR][1000 genomes]
rs9387158	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387163	1.00[AMR][1000 genomes]
rs9400646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400647	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400648	0.83[AMR][1000 genomes]
rs9400655	1.00[AMR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113930400-113934800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:113931000-113933600	Enhancers	Fetal Stomach	stomach
3	chr6:113931600-113933600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:113932800-113941800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:113933000-113934200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:113933000-113939400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:113933000-113943400	Weak transcription	Pancreas	Pancrea
8	chr6:113933000-113952000	Weak transcription	Psoas Muscle	Psoas
9	chr6:113933200-113943200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:113933400-113934400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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