Variant report

Variant	rs4945961
Chromosome Location	chr6:113962503-113962504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113809466..113812026-chr6:113961863..113964476,2	MCF-7	breast:

rs_ID	r²[population]
rs10732719	0.83[AMR][1000 genomes]
rs11153426	0.83[AMR][1000 genomes]
rs1339040	0.83[AMR][1000 genomes]
rs1339041	0.83[AMR][1000 genomes]
rs1383805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1481433	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1538460	0.83[AMR][1000 genomes]
rs2003888	0.83[AMR][1000 genomes]
rs2127989	0.83[AMR][1000 genomes]
rs4632923	0.83[AMR][1000 genomes]
rs4945500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4945962	0.83[AMR][1000 genomes]
rs6911610	0.83[AMR][1000 genomes]
rs6917191	0.83[AMR][1000 genomes]
rs6925360	0.83[AMR][1000 genomes]
rs6930982	0.83[AMR][1000 genomes]
rs922722	0.83[AMR][1000 genomes]
rs9320466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9374409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387158	0.83[AMR][1000 genomes]
rs9387163	0.83[AMR][1000 genomes]
rs9400646	0.83[AMR][1000 genomes]
rs9400647	0.83[AMR][1000 genomes]
rs9400648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400655	0.83[AMR][1000 genomes]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113954000-113963800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:113954200-113965600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:113954400-113964000	Weak transcription	Left Ventricle	heart
5	chr6:113954400-113964400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:113954600-113970400	Weak transcription	Right Atrium	heart
7	chr6:113956800-113966400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:113957200-113962600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:113957800-113964000	Weak transcription	Osteobl	bone
10	chr6:113958000-113962600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:113958000-113963200	Weak transcription	Liver	Liver
12	chr6:113958200-113963400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:113958400-113963400	Weak transcription	A549	lung
14	chr6:113958400-113963600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:113958800-113963600	Weak transcription	Placenta	Placenta
16	chr6:113959000-113964000	Weak transcription	Hela-S3	cervix
17	chr6:113959400-113963200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:113959400-113963800	Weak transcription	Pancreas	Pancrea
19	chr6:113959400-113972000	Weak transcription	Gastric	stomach
20	chr6:113960800-113967600	Enhancers	Fetal Intestine Small	intestine
21	chr6:113961000-113963400	Enhancers	HepG2	liver
22	chr6:113961600-113963600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:113961600-113963600	Weak transcription	GM12878-XiMat	blood
24	chr6:113961600-113964200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:113961800-113962800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:113961800-113962800	Weak transcription	Stomach Mucosa	stomach
27	chr6:113961800-113963600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:113962200-113962600	Weak transcription	Fetal Intestine Large	intestine

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