Variant report

Variant	rs6925360
Chromosome Location	chr6:113947599-113947600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC2-2	chr6:113947548-113948877	XLOC_005810
2	lnc-MARCKS-14	chr6:113946414-113949609	NONHSAT114552

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10732719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11153426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13212281	0.84[YRI][hapmap]
rs1339040	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1339041	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1383805	0.83[AMR][1000 genomes]
rs1481433	0.83[AMR][1000 genomes]
rs1538460	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2003888	1.00[AMR][1000 genomes]
rs2127989	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs422286	0.88[AFR][1000 genomes]
rs4632923	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4945500	0.83[AMR][1000 genomes]
rs4945958	0.81[AFR][1000 genomes]
rs4945960	0.83[AMR][1000 genomes]
rs4945961	0.83[AMR][1000 genomes]
rs4945962	0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911610	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6917191	1.00[AMR][1000 genomes]
rs6930982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940419	0.83[AMR][1000 genomes]
rs922722	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9320466	0.83[AMR][1000 genomes]
rs9374409	0.83[AMR][1000 genomes]
rs9374413	0.81[AFR][1000 genomes]
rs9384877	0.83[AFR][1000 genomes]
rs9387158	0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400647	0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400648	0.83[AMR][1000 genomes]
rs9400655	1.00[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113933000-113952000	Weak transcription	Psoas Muscle	Psoas
2	chr6:113941400-113948000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:113941800-113951000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:113942200-113950200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:113942200-113950600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:113942200-113951000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:113942200-113952200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:113942400-113952800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:113943000-113956400	Weak transcription	Esophagus	oesophagus
10	chr6:113944200-113951200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:113944600-113947800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:113944800-113949200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:113945400-113951200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:113945600-113952000	Weak transcription	Fetal Intestine Small	intestine
15	chr6:113945800-113947800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:113946600-113948400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:113946600-113956000	Flanking Active TSS	GM12878-XiMat	blood
18	chr6:113946800-113952000	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:113947200-113951000	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links