Variant report

Variant	rs9387158
Chromosome Location	chr6:113951217-113951218
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113951154..113956306-chr6:114178159..114180970,5	MCF-7	breast:
2	chr6:113933065..113935315-chr6:113948836..113951545,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10732719	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11153426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13212281	0.92[YRI][hapmap]
rs1339040	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1339041	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1383805	0.83[AMR][1000 genomes]
rs1481433	0.83[AMR][1000 genomes]
rs1538460	0.82[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2003888	1.00[AMR][1000 genomes]
rs2127989	0.84[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs413599	0.84[YRI][hapmap]
rs422286	0.81[AFR][1000 genomes]
rs4632923	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4945500	0.83[AMR][1000 genomes]
rs4945960	0.83[AMR][1000 genomes]
rs4945961	0.83[AMR][1000 genomes]
rs4945962	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6911610	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6917191	1.00[AMR][1000 genomes]
rs6925360	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940419	0.83[AMR][1000 genomes]
rs922722	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9320466	0.83[AMR][1000 genomes]
rs9374409	0.83[AMR][1000 genomes]
rs9374413	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs9384877	0.83[AFR][1000 genomes]
rs9387163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400647	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400648	0.83[AMR][1000 genomes]
rs9400655	1.00[AMR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113933000-113952000	Weak transcription	Psoas Muscle	Psoas
2	chr6:113942200-113952200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:113942400-113952800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:113943000-113956400	Weak transcription	Esophagus	oesophagus
5	chr6:113945600-113952000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:113946600-113956000	Flanking Active TSS	GM12878-XiMat	blood
7	chr6:113946800-113952000	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:113948200-113951800	Weak transcription	HepG2	liver
9	chr6:113948200-113952200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:113948200-113952200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:113948400-113953400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:113950000-113952000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:113950000-113954400	Enhancers	Fetal Muscle Leg	muscle
14	chr6:113950200-113952000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:113950200-113952000	Enhancers	Primary B cells from cord blood	blood
16	chr6:113950200-113952000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:113950200-113952200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr6:113950200-113954400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:113950400-113952200	Weak transcription	Aorta	Aorta
20	chr6:113950400-113952200	Weak transcription	Left Ventricle	heart
21	chr6:113950400-113952200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:113950400-113953400	Enhancers	Adipose Nuclei	Adipose
23	chr6:113950400-113953400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:113950600-113951400	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr6:113950600-113951800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:113950600-113951800	Weak transcription	Fetal Thymus	thymus
27	chr6:113950600-113952200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:113950600-113952200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:113950600-113952800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:113950600-113953000	Enhancers	Rectal Smooth Muscle	rectum
31	chr6:113950600-113954000	Enhancers	Fetal Lung	lung
32	chr6:113950600-113954200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:113950800-113951400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr6:113950800-113951400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr6:113950800-113952000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:113950800-113952000	Weak transcription	HSMMtube	muscle
37	chr6:113950800-113954200	Weak transcription	Spleen	Spleen
38	chr6:113951000-113951800	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:113951000-113952000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:113951000-113952200	Enhancers	NHEK	skin
41	chr6:113951000-113952600	Enhancers	NHDF-Ad	bronchial
42	chr6:113951000-113952800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:113951000-113953400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:113951000-113953400	Enhancers	Osteobl	bone
45	chr6:113951000-113953600	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:113951000-113953600	Enhancers	Stomach Mucosa	stomach
47	chr6:113951000-113954200	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr6:113951200-113951400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:113951200-113951400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:113951200-113951400	Enhancers	Pancreas	Pancrea

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