Variant report

Variant	rs4945962
Chromosome Location	chr6:113963724-113963725
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113959124..113960950-chr6:113962828..113965143,2	MCF-7	breast:
2	chr6:113809466..113812026-chr6:113961863..113964476,2	MCF-7	breast:
3	chr6:113958397..113961300-chr6:113962651..113965276,2	MCF-7	breast:
4	chr6:113962572..113972353-chr6:114176344..114182135,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10732719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11153426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13212281	0.84[YRI][hapmap]
rs1339040	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1339041	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1383805	0.83[AMR][1000 genomes]
rs1481433	0.83[AMR][1000 genomes]
rs1538460	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2003888	1.00[AMR][1000 genomes]
rs2127989	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs413599	0.82[AFR][1000 genomes]
rs422286	0.84[AFR][1000 genomes]
rs4632923	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4945500	0.83[AMR][1000 genomes]
rs4945960	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4945961	0.83[AMR][1000 genomes]
rs6911610	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6917191	1.00[AMR][1000 genomes]
rs6925360	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940419	0.83[AMR][1000 genomes]
rs922722	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9320466	0.83[AMR][1000 genomes]
rs9374409	0.83[AMR][1000 genomes]
rs9374413	0.84[AFR][1000 genomes]
rs9384877	0.86[AFR][1000 genomes]
rs9387158	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387163	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400646	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400647	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400648	0.83[AMR][1000 genomes]
rs9400655	1.00[AMR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113954000-113963800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:113954200-113965600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:113954400-113964000	Weak transcription	Left Ventricle	heart
5	chr6:113954400-113964400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:113954600-113970400	Weak transcription	Right Atrium	heart
7	chr6:113956800-113966400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:113957800-113964000	Weak transcription	Osteobl	bone
9	chr6:113959000-113964000	Weak transcription	Hela-S3	cervix
10	chr6:113959400-113963800	Weak transcription	Pancreas	Pancrea
11	chr6:113959400-113972000	Weak transcription	Gastric	stomach
12	chr6:113960800-113967600	Enhancers	Fetal Intestine Small	intestine
13	chr6:113961600-113964200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:113962600-113964000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:113962600-113967600	Enhancers	Fetal Intestine Large	intestine
16	chr6:113962800-113963800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:113962800-113964000	Enhancers	Stomach Mucosa	stomach
18	chr6:113962800-113964400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:113963200-113963800	Enhancers	Liver	Liver
20	chr6:113963400-113963800	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr6:113963400-113963800	Enhancers	A549	lung
22	chr6:113963400-113964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:113963400-113964000	Flanking Active TSS	HepG2	liver
24	chr6:113963600-113963800	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr6:113963600-113963800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr6:113963600-113964200	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr6:113963600-113964800	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:113963600-113964800	Flanking Active TSS	GM12878-XiMat	blood
29	chr6:113963600-113965600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:113963600-113967600	Enhancers	Fetal Heart	heart
31	chr6:113963600-113967600	Enhancers	Placenta	Placenta

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